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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3183-RA through 18771 annotations produced 1 hits

geminin (geminin):

Annotation Number : CG3183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033081
Gbrowse : chr2R:2542958-2543955 (-) // 100.0 //
Probeset : 1623108_at
Accessions : protein= NP_610218;, nucleotide= NM_136374;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0003677 // DNA binding // non-traceable author statement
FlyMine data for FBgn0033081.
BDGP gene expression has embryonic in situ data for geminin: 27 pix of staining in 14 body parts.
BioGrid reports that CG3183 interacts with CG5450 CG6333 CG6998 CG8171 CG8079 CG8171 CG8171 CG33133 .
TRiP has 2 RNAi stocks for FBgn0033081 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 54 of 4 0.30Down
Head129 24 of 4 0.20Down
Eye104 44 of 4 0.17Down
Thoracicoabdominal ganglion130 44 of 4 0.20Down
Salivary gland142 54 of 4 0.23Down
Crop119 74 of 4 0.20Down
Midgut156 84 of 4 0.30Down
Tubule106 34 of 4 0.20Down
Hindgut113 64 of 4 0.20Down
Heart87 54 of 4 0.14Down
Fat body64 74 of 4 0.11Down
Ovary1316 184 of 4 2.20Up
Testis203 44 of 4 0.30Down
Male accessory glands206 84 of 4 0.30Down
Virgin spermatheca80 64 of 4 0.13Down
Mated spermatheca104 124 of 4 0.17Down
Adult carcass100 104 of 4 0.20Down
Larval CNS738 234 of 4 1.22Up
Larval Salivary gland360 124 of 4 0.60Down
Larval midgut90 24 of 4 0.15Down
Larval tubule120 44 of 4 0.20Down
Larval hindgut161 94 of 4 0.27Down
Larval fat body99 104 of 4 0.20Down
Larval trachea322 374 of 4 0.53Down
Larval carcass157 74 of 4 0.26Down
S2 cells (growing)673 134 of 4 1.11Up
Whole fly605 164 of 4

Looking for CG3183-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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