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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31832-RA through 18771 annotations produced 1 hits

Fibrinogen-related protein (CG31832):

Annotation Number : CG31832
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051832
Gbrowse : chr2L:15031155-15031720 (-) // 100.0 //
Probeset : 1630260_at
Accessions : protein= NP_723894;, nucleotide= NM_165098;
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0051832.
Homophila reports that CG31832 is a close match (7e-18) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 3 RNAi stocks for FBgn0051832 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 01 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye0 00 of 4 0.03Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland7 20 of 4 0.39Down
Crop2 10 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart659 1104 of 435.84Up
Fat body565 744 of 430.71Up
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.10Down
Mated spermatheca4 10 of 4 0.24Down
Adult carcass367 484 of 420.00Up
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland2 10 of 4 0.14Down
Larval midgut1 00 of 4 0.06Down
Larval tubule1 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.09Down
Larval fat body3 10 of 4 0.20Down
Larval trachea1 00 of 4 0.05Down
Larval carcass36 94 of 4 1.99None
S2 cells (growing)1 00 of 4 0.09Down
Whole fly18 34 of 4

Looking for CG31832-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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