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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31835-RA through 18771 annotations produced 1 hits



/// (CG31835 /// CG42585):

Annotation Number : CG31835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051835 /// FBgn0260953
Gbrowse : chr2L:14740021-14741071 (+) // 100.0 // /// chr2L:14735950-14737000 (+) // 100.0 // /// chrUextra:223477-224527 (-) // 100.0 //
Probeset : 1634490_at
Accessions : protein= NP_001162977; /// NP_723881;, nucleotide= NM_001169506; /// NM_165090;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0051835 /// FBgn0260953.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.10Down
Eye2 10 of 4 0.07Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland2 00 of 4 0.09Down
Crop3 10 of 4 0.10Down
Midgut8 20 of 4 0.30Down
Tubule3 10 of 4 0.10Down
Hindgut6 10 of 4 0.20Down
Heart3 20 of 4 0.12Down
Fat body4 30 of 4 0.13Down
Ovary1 00 of 4 0.00Down
Testis437 84 of 414.60Up
Male accessory glands6 20 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.14Down
Mated spermatheca7 10 of 4 0.24Down
Adult carcass3 10 of 4 0.10Down
Larval CNS2 10 of 4 0.09Down
Larval Salivary gland2 00 of 4 0.10Down
Larval midgut6 11 of 4 0.22Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut5 10 of 4 0.16Down
Larval fat body43 233 of 4 1.40None
Larval trachea5 31 of 4 0.20Down
Larval carcass5 11 of 4 0.20Down
S2 cells (growing)2 00 of 4 0.08Down
Whole fly30 34 of 4

Looking for CG31835-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime