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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31845-RA through 18771 annotations produced 1 hits



(CG31845):

Annotation Number : CG31845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051845
Gbrowse : chr2L:13777194-13777831 (+) // 100.0 //
Probeset : 1638924_at
Accessions : protein= NP_723836;, nucleotide= NM_165056;
FlyMine data for FBgn0051845.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.40Down
Head3 ± 11 of 4 0.30Down
Eye2 ± 00 of 4 0.18Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.60Down
Salivary gland15 ± 11 of 4 1.33None
Crop9 ± 21 of 4 0.80None
Midgut8 ± 10 of 4 0.70None
Tubule3 ± 00 of 4 0.30Down
Hindgut6 ± 21 of 4 0.50None
Heart2 ± 00 of 4 0.22Down
Fat body6 ± 20 of 4 0.52Down
Ovary3 ± 12 of 4 0.30Down
Testis40 ± 04 of 4 3.50Up
Male accessory glands6 ± 20 of 4 0.50None
Virgin spermatheca9 ± 12 of 4 0.83None
Mated spermatheca9 ± 12 of 4 0.78None
Adult carcass11 ± 21 of 4 1.00None
Larval CNS3 ± 11 of 4 0.33Down
Larval Salivary gland5 ± 11 of 4 0.45Down
Larval midgut7 ± 20 of 4 0.68None
Larval tubule3 ± 00 of 4 0.30Down
Larval hindgut4 ± 10 of 4 0.35Down
Larval fat body10 ± 21 of 4 0.90None
Larval trachea4 ± 31 of 4 0.36Down
Larval carcass3 ± 11 of 4 0.32Down
S2 cells (growing)3 ± 00 of 4 0.31Down
Whole fly11 ± 04 of 4

Looking for CG31845-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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