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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31857-RA through 18771 annotations produced 1 hits



bunched (bun):

Annotation Number : CG31857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259176
Gbrowse : chr2L:12516437-12517100 (-) // 100.0 //
Probeset : 1631003_at
Accessions : protein= NP_001036357; /// NP_001036358; /// NP_001036359; /// NP_001162964; /// NP_001162965; /// NP_525103; /// NP_723755; /// NP_723756;, nucleotide= NM_001042892; /// NM_001042893; /// NM_001042894; /// NM_001169493; /// NM_001169494; /// NM_080364; /// NM_165012; /// NM_165013;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
FlyMine data for FBgn0259176.
TRiP has 1 RNAi stocks for FBgn0259176 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259176 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 6.90Up
Head6 30 of 4 1.30None
Eye6 22 of 4 1.36None
Thoracicoabdominal ganglion31 54 of 4 6.40Up
Salivary gland6 10 of 4 1.39None
Crop22 24 of 4 4.60Up
Midgut13 11 of 4 2.70Up
Tubule5 00 of 4 1.00None
Hindgut14 02 of 4 2.90Up
Heart3 10 of 4 0.61None
Fat body6 30 of 4 1.31None
Ovary2 00 of 4 0.60None
Testis5 11 of 4 1.10None
Male accessory glands8 11 of 4 1.70None
Virgin spermatheca4 10 of 4 0.80None
Mated spermatheca3 00 of 4 0.67None
Adult carcass9 20 of 4 2.00None
Larval CNS11 14 of 4 2.28Up
Larval Salivary gland6 20 of 4 1.36None
Larval midgut5 10 of 4 1.04None
Larval tubule9 21 of 4 1.80None
Larval hindgut5 10 of 4 1.16None
Larval fat body10 21 of 4 2.20None
Larval trachea3 00 of 4 0.77None
Larval carcass5 10 of 4 1.20None
S2 cells (growing)7 00 of 4 1.53None
Whole fly5 00 of 4

Looking for CG31857-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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