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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31871-RA through 18771 annotations produced 1 hits



(CG31871):

Annotation Number : CG31871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051871
Gbrowse : chr2L:10662086-10671489 (+) // 100.0 //
Probeset : 1640403_at
Accessions : protein= NP_723607;, nucleotide= NM_164939;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0051871.
BDGP gene expression has embryonic in situ data for CG31871: 29 pix of staining in 20 body parts.
Homophila reports that CG31871 is a close match (5e-63) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 3 RNAi stocks for FBgn0051871 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.80None
Head24 24 of 4 3.90Up
Eye30 34 of 4 4.83Up
Thoracicoabdominal ganglion2 00 of 4 0.30Down
Salivary gland24 32 of 4 3.87Up
Crop16 14 of 4 2.50Up
Midgut5 20 of 4 0.80None
Tubule7 00 of 4 1.20Up
Hindgut32 34 of 4 5.10Up
Heart4 12 of 4 0.71None
Fat body14 53 of 4 2.29Up
Ovary3 00 of 4 0.50Down
Testis2 00 of 4 0.40Down
Male accessory glands8 01 of 4 1.30None
Virgin spermatheca22 34 of 4 3.57Up
Mated spermatheca31 54 of 4 4.97Up
Adult carcass16 12 of 4 2.60Up
Larval CNS6 14 of 4 1.02None
Larval Salivary gland11 10 of 4 1.75None
Larval midgut4 11 of 4 0.75None
Larval tubule8 11 of 4 1.30None
Larval hindgut30 24 of 4 4.89Up
Larval fat body10 10 of 4 1.70None
Larval trachea17 24 of 4 2.72Up
Larval carcass10 03 of 4 1.59Up
S2 cells (growing)4 11 of 4 0.72None
Whole fly6 03 of 4

Looking for CG31871-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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