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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31874-RA through 18771 annotations produced 1 hits



(CG31874):

Annotation Number : CG31874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051874
Gbrowse : chr2L:10189915-10191496 (-) // 100.0 //
Probeset : 1639126_at
Accessions : protein= NP_723527;, nucleotide= NM_164891;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // infer
FlyMine data for FBgn0051874.
Homophila reports that CG31874 is a close match (1e-157) to human gene FH (NP_000134), a gene associated with Fumarase deficiency, 606812 (3);Leiomyomatosis and renal cell cancer, 605839 (3);Multiple cutaneous and uterine leiomyomata, 150800 (3).
VDRC has 3 RNAi stocks for FBgn0051874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.05Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 00 of 4 0.04Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.02Down
Fat body1 00 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis592 184 of 411.50Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca2 10 of 4 0.05Down
Adult carcass4 30 of 4 0.10Down
Larval CNS0 00 of 4 0.02Down
Larval Salivary gland2 00 of 4 0.04Down
Larval midgut5 20 of 4 0.10Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.02Down
Larval fat body46 272 of 4 0.90None
Larval trachea2 30 of 4 0.05Down
Larval carcass2 10 of 4 0.06Down
S2 cells (growing)0 00 of 4 0.02Down
Whole fly51 44 of 4

Looking for CG31874-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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