Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31875-RA through 18771 annotations produced 1 hits



(CG31875):

Annotation Number : CG31875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051875
Gbrowse : chr2L:9995560-9996572 (-) // 100.0 //
Probeset : 1634584_at
Accessions : protein= NP_723509;, nucleotide= NM_164884;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0051875.
VDRC has 4 RNAi stocks for FBgn0051875 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 0.10Down
Head6 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland31 ± 62 of 4 0.53Down
Crop29 ± 23 of 4 0.50Down
Midgut59 ± 44 of 4 1.00None
Tubule38 ± 34 of 4 0.60Down
Hindgut21 ± 21 of 4 0.30Down
Heart5 ± 10 of 4 0.09Down
Fat body16 ± 20 of 4 0.27Down
Ovary165 ± 94 of 4 2.70Up
Testis119 ± 74 of 4 2.00Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca15 ± 03 of 4 0.26Down
Mated spermatheca20 ± 33 of 4 0.34Down
Adult carcass10 ± 61 of 4 0.20Down
Larval CNS23 ± 24 of 4 0.38Down
Larval Salivary gland9 ± 20 of 4 0.15Down
Larval midgut32 ± 14 of 4 0.54Down
Larval tubule48 ± 14 of 4 0.80None
Larval hindgut23 ± 24 of 4 0.39Down
Larval fat body32 ± 62 of 4 0.50Down
Larval trachea8 ± 20 of 4 0.14Down
Larval carcass13 ± 10 of 4 0.22Down
S2 cells (growing)19 ± 32 of 4 0.32Down
Whole fly60 ± 44 of 4

Looking for CG31875-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime