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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31878-RB through 18771 annotations produced 2 hits



():

Annotation Number : CG31878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259712
Gbrowse : chr2L:9929804-9930999 (+) // 100.0 //
Probeset : 1627503_at
Accessions : protein= NP_723501;, nucleotide= NM_164876;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0259712.
TRiP has 3 RNAi stocks for FBgn0259712 available for purchase.
VDRC has 4 RNAi stocks for FBgn0259712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.70None
Head12 ± 20 of 4 2.10None
Eye9 ± 01 of 4 1.54Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.50None
Salivary gland10 ± 30 of 4 1.85None
Crop2 ± 10 of 4 0.50None
Midgut6 ± 10 of 4 1.10None
Tubule4 ± 00 of 4 0.70Down
Hindgut5 ± 20 of 4 0.90None
Heart2 ± 00 of 4 0.49Down
Fat body7 ± 40 of 4 1.35None
Ovary1 ± 00 of 4 0.30Down
Testis4 ± 10 of 4 0.80None
Male accessory glands1 ± 00 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.54None
Mated spermatheca3 ± 10 of 4 0.59None
Adult carcass3 ± 10 of 4 0.60None
Larval CNS4 ± 30 of 4 0.77None
Larval Salivary gland3 ± 20 of 4 0.62None
Larval midgut7 ± 00 of 4 1.34None
Larval tubule4 ± 10 of 4 0.70None
Larval hindgut5 ± 12 of 4 0.91None
Larval fat body8 ± 30 of 4 1.50None
Larval trachea3 ± 20 of 4 0.67None
Larval carcass10 ± 11 of 4 1.82Up
S2 cells (growing)3 ± 10 of 4 0.63None
Whole fly5 ± 00 of 4



(CG42367):

Annotation Number : CG31878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259713
Gbrowse : chr2L:9929804-9930999 (+) // 100.0 //
Probeset : 1631680_a_at
Accessions : protein= NP_723503;, nucleotide= NM_164878;
Interpro : 0042302 // structural constituent of cuticle // inferred from electronic annotation
FlyMine data for FBgn0259713.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.40None
Head20 ± 34 of 4 6.40Up
Eye200 ± 594 of 463.67Up
Thoracicoabdominal ganglion3 ± 00 of 4 1.00None
Salivary gland10 ± 70 of 4 3.37None
Crop1 ± 00 of 4 0.50None
Midgut8 ± 10 of 4 2.50None
Tubule3 ± 00 of 4 1.10None
Hindgut2 ± 10 of 4 0.80None
Heart0 ± 00 of 4 0.17Down
Fat body2 ± 10 of 4 0.70None
Ovary1 ± 00 of 4 0.60None
Testis2 ± 10 of 4 0.80None
Male accessory glands4 ± 20 of 4 1.50None
Virgin spermatheca2 ± 00 of 4 0.75None
Mated spermatheca1 ± 00 of 4 0.51None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS1 ± 10 of 4 0.49None
Larval Salivary gland2 ± 00 of 4 0.67None
Larval midgut11 ± 30 of 4 3.67None
Larval tubule2 ± 00 of 4 0.80None
Larval hindgut1 ± 00 of 4 0.49None
Larval fat body2 ± 00 of 4 0.70None
Larval trachea3 ± 31 of 4 0.99None
Larval carcass1 ± 00 of 4 0.39None
S2 cells (growing)1 ± 00 of 4 0.56None
Whole fly3 ± 00 of 4

Looking for CG31878-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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