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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31884-RB through 18771 annotations produced 1 hits



thioredoxin (Trx-2):

Annotation Number : CG31884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040070
Gbrowse : chr2L:9613181-9616048 (+) // 100.0 //
Probeset : 1629426_s_at
Accessions : protein= NP_523526; /// NP_723475;, nucleotide= NM_078802; /// NM_164863;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreduct
FlyMine data for FBgn0040070.
BioGrid reports that CG31884 interacts with CG6667 .
TRiP has 2 RNAi stocks for FBgn0040070 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain785 344 of 4 0.80Down
Head1301 444 of 4 1.30Up
Eye1560 834 of 4 1.55Up
Thoracicoabdominal ganglion906 234 of 4 0.90None
Salivary gland483 254 of 4 0.48Down
Crop1994 504 of 4 2.00Up
Midgut1486 564 of 4 1.50Up
Tubule2833 2034 of 4 2.80Up
Hindgut1356 344 of 4 1.40Up
Heart1823 394 of 4 1.82Up
Fat body1123 994 of 4 1.12None
Ovary1083 264 of 4 1.10None
Testis201 84 of 4 0.20Down
Male accessory glands3128 1834 of 4 3.10Up
Virgin spermatheca735 314 of 4 0.73Down
Mated spermatheca1028 604 of 4 1.02None
Adult carcass1267 154 of 4 1.30Up
Larval CNS967 794 of 4 0.96None
Larval Salivary gland786 154 of 4 0.78Down
Larval midgut1281 1224 of 4 1.28None
Larval tubule1088 914 of 4 1.10None
Larval hindgut1238 394 of 4 1.23Up
Larval fat body975 974 of 4 1.00None
Larval trachea2040 864 of 4 2.03Up
Larval carcass1681 1454 of 4 1.68Up
S2 cells (growing)1972 294 of 4 1.97Up
Whole fly1003 534 of 4

Looking for CG31884-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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