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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31901-RA through 18771 annotations produced 1 hits

Mucin related 29B (Mur29B):

Annotation Number : CG31901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051901
Gbrowse : chr2L:8352206-8355172 (+) // 100.0 //
Probeset : 1623790_at
Accessions : protein= NP_723377;, nucleotide= NM_164808;
FlyMine data for FBgn0051901.
VDRC has 1 RNAi stocks for FBgn0051901 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head5 20 of 4 0.00Down
Eye3 11 of 4 0.01Down
Thoracicoabdominal ganglion1 10 of 4 0.00Down
Salivary gland6 10 of 4 0.02Down
Crop6 40 of 4 0.00Down
Midgut2678 1544 of 4 8.60Up
Tubule800 1924 of 4 2.60Up
Hindgut2960 1034 of 4 9.60Up
Heart0 00 of 4 0.00Down
Fat body10 201 of 4 0.03Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca2 00 of 4 0.01Down
Mated spermatheca3 20 of 4 0.01Down
Adult carcass2 10 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland0 00 of 4 0.00Down
Larval midgut3161 1154 of 410.21Up
Larval tubule1380 1634 of 4 4.50Up
Larval hindgut3245 1334 of 410.48Up
Larval fat body6 30 of 4 0.00Down
Larval trachea0 00 of 4 0.00Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly309 284 of 4

Looking for CG31901-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime