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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31906-RA through 18771 annotations produced 2 hits



Na[+]-driven anion exchanger 1 (Ndae1):

Annotation Number : CG31906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259111
Gbrowse : chr2L:7224850-7225856 (-) // 100.0 //
Probeset : 1633207_at
Accessions : protein= NP_523501; /// NP_723263; /// NP_723264;, nucleotide= NM_078777; /// NM_164743; /// NM_164743; /// NM_164744;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity
FlyMine data for FBgn0259111.
VDRC has 5 RNAi stocks for FBgn0259111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 44 of 4 9.60Up
Head74 84 of 4 8.10Up
Eye283 254 of 431.10Up
Thoracicoabdominal ganglion52 34 of 4 5.70Up
Salivary gland2 00 of 4 0.28Down
Crop7 21 of 4 0.90None
Midgut1 00 of 4 0.10Down
Tubule7 10 of 4 0.80None
Hindgut6 20 of 4 0.70None
Heart10 23 of 4 1.16None
Fat body4 30 of 4 0.53None
Ovary1 00 of 4 0.10Down
Testis60 14 of 4 6.60Up
Male accessory glands3 10 of 4 0.40Down
Virgin spermatheca6 10 of 4 0.68None
Mated spermatheca6 20 of 4 0.66None
Adult carcass11 31 of 4 1.20None
Larval CNS10 13 of 4 1.12None
Larval Salivary gland14 20 of 4 1.62None
Larval midgut3 10 of 4 0.34Down
Larval tubule6 11 of 4 0.80None
Larval hindgut1 00 of 4 0.11Down
Larval fat body10 10 of 4 1.20None
Larval trachea2 10 of 4 0.24Down
Larval carcass0 00 of 4 0.09Down
S2 cells (growing)1 00 of 4 0.15Down
Whole fly9 11 of 4



Na[+]-driven anion exchanger 1 (Ndae1):

Annotation Number : CG4675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259111
Gbrowse : chr2L:7226820-7240500 (-) // 99.89 //
Probeset : 1640301_a_at
Accessions : protein= NP_523501; /// NP_723263; /// NP_723264;, nucleotide= NM_078777; /// NM_164743; /// NM_164743; /// NM_164744;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005452 // inorganic anion exchanger activity
FlyMine data for FBgn0259111.
Homophila reports that CG4675 is a close match (4e-47) to human gene BTR1;CDPD;CHED2;NABC1;SLC4A11 (NP_114423), a gene associated with Corneal endothelial dystrophy 2, 217700 (3);Corneal endothelial dystrophy and perceptive deafness, 217400 (3).
BioGrid reports that CG4675 interacts with CG5430 CG7111 .
VDRC has 5 RNAi stocks for FBgn0259111 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 24 of 4 4.80Up
Head67 64 of 4 3.00Up
Eye76 34 of 4 3.37Up
Thoracicoabdominal ganglion47 34 of 4 2.10Up
Salivary gland7 40 of 4 0.34Down
Crop73 34 of 4 3.30Up
Midgut47 34 of 4 2.10Up
Tubule111 64 of 4 4.90Up
Hindgut78 34 of 4 3.50Up
Heart80 74 of 4 3.55Up
Fat body134 134 of 4 5.93Up
Ovary3 00 of 4 0.10Down
Testis27 24 of 4 1.20None
Male accessory glands8 20 of 4 0.40Down
Virgin spermatheca30 14 of 4 1.33None
Mated spermatheca33 14 of 4 1.47None
Adult carcass63 24 of 4 2.80Up
Larval CNS37 54 of 4 1.64Up
Larval Salivary gland240 224 of 410.65Up
Larval midgut114 24 of 4 5.05Up
Larval tubule383 204 of 417.00Up
Larval hindgut83 54 of 4 3.68Up
Larval fat body13 30 of 4 0.60None
Larval trachea4 20 of 4 0.20Down
Larval carcass20 23 of 4 0.90None
S2 cells (growing)64 44 of 4 2.87Up
Whole fly22 34 of 4

Looking for CG31906-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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