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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31918-RA through 18771 annotations produced 1 hits



(CG31918):

Annotation Number : CG31918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031678
Gbrowse : chr2L:5055977-5058241 (-) // 99.82 //
Probeset : 1632694_at
Accessions : protein= NP_608904;, nucleotide= NM_135060;
Interpro : 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity
FlyMine data for FBgn0031678.
VDRC has 3 RNAi stocks for FBgn0031678 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 02 of 4 0.60Down
Head6 ± 20 of 4 0.40Down
Eye7 ± 13 of 4 0.44Down
Thoracicoabdominal ganglion10 ± 22 of 4 0.60None
Salivary gland13 ± 20 of 4 0.83None
Crop3 ± 10 of 4 0.20Down
Midgut12 ± 13 of 4 0.80None
Tubule7 ± 00 of 4 0.40Down
Hindgut5 ± 11 of 4 0.30Down
Heart7 ± 22 of 4 0.45Down
Fat body9 ± 42 of 4 0.60None
Ovary49 ± 44 of 4 3.00Up
Testis12 ± 13 of 4 0.80None
Male accessory glands9 ± 10 of 4 0.60Down
Virgin spermatheca5 ± 10 of 4 0.33Down
Mated spermatheca3 ± 10 of 4 0.24Down
Adult carcass10 ± 10 of 4 0.70None
Larval CNS71 ± 104 of 4 4.36Up
Larval Salivary gland52 ± 84 of 4 3.18Up
Larval midgut38 ± 24 of 4 2.35Up
Larval tubule43 ± 64 of 4 2.70Up
Larval hindgut57 ± 44 of 4 3.53Up
Larval fat body37 ± 44 of 4 2.30Up
Larval trachea58 ± 34 of 4 3.59Up
Larval carcass49 ± 34 of 4 3.01Up
S2 cells (growing)1283 ± 74 of 478.53Up
Whole fly16 ± 14 of 4

Looking for CG31918-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime