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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31922-RA through 18771 annotations produced 1 hits



(CG31922):

Annotation Number : CG31922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051922
Gbrowse : chr2L:1170233-1170847 (+) // 100.0 //
Probeset : 1637791_at
Accessions : protein= NP_722687;, nucleotide= NM_164408;
Pathway : 0030532 // small nuclear ribonucleoprotein complex // inferred from sequence or structural similarity
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0051922.
VDRC has 3 RNAi stocks for FBgn0051922 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 24 of 4 2.70Up
Head27 ± 14 of 4 1.50Up
Eye30 ± 24 of 4 1.60Up
Thoracicoabdominal ganglion41 ± 14 of 4 2.20Up
Salivary gland23 ± 32 of 4 1.20None
Crop32 ± 24 of 4 1.70Up
Midgut26 ± 24 of 4 1.40None
Tubule22 ± 04 of 4 1.20Up
Hindgut36 ± 14 of 4 1.90Up
Heart43 ± 24 of 4 2.25Up
Fat body27 ± 24 of 4 1.41Up
Ovary26 ± 24 of 4 1.40Up
Testis14 ± 04 of 4 0.80Down
Male accessory glands16 ± 33 of 4 0.90None
Virgin spermatheca16 ± 14 of 4 0.83None
Mated spermatheca21 ± 24 of 4 1.13None
Adult carcass24 ± 24 of 4 1.30None
Larval CNS84 ± 64 of 4 4.41Up
Larval Salivary gland38 ± 24 of 4 2.02Up
Larval midgut19 ± 24 of 4 0.99None
Larval tubule24 ± 14 of 4 1.30Up
Larval hindgut26 ± 24 of 4 1.40Up
Larval fat body12 ± 23 of 4 0.70Down
Larval trachea41 ± 74 of 4 2.16Up
Larval carcass26 ± 14 of 4 1.37Up
S2 cells (growing)60 ± 34 of 4 3.15Up
Whole fly19 ± 14 of 4

Looking for CG31922-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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