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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3194-RA through 18771 annotations produced 1 hits



(CG3194):

Annotation Number : CG3194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033087
Gbrowse : chr2R:2558536-2560850 (-) // 100.0 //
Probeset : 1628914_at
Accessions : protein= NP_001163062; /// NP_610249;, nucleotide= NM_001169591; /// NM_136405;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0016853 // isomerase activity // inferred from electronic annotation /// 0016857 // racemase and epimerase activity
FlyMine data for FBgn0033087.
VDRC has 2 RNAi stocks for FBgn0033087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 44 of 4 1.50Up
Head31 ± 33 of 4 1.20None
Eye11 ± 02 of 4 0.43Down
Thoracicoabdominal ganglion29 ± 54 of 4 1.20None
Salivary gland46 ± 44 of 4 1.80Up
Crop59 ± 44 of 4 2.30Up
Midgut27 ± 14 of 4 1.10None
Tubule19 ± 13 of 4 0.80Down
Hindgut38 ± 14 of 4 1.50Up
Heart13 ± 12 of 4 0.51Down
Fat body29 ± 82 of 4 1.15None
Ovary36 ± 14 of 4 1.40Up
Testis17 ± 14 of 4 0.70Down
Male accessory glands24 ± 32 of 4 1.00None
Virgin spermatheca7 ± 00 of 4 0.30Down
Mated spermatheca5 ± 10 of 4 0.20Down
Adult carcass31 ± 01 of 4 1.20Up
Larval CNS22 ± 34 of 4 0.88None
Larval Salivary gland33 ± 33 of 4 1.32None
Larval midgut19 ± 02 of 4 0.76Down
Larval tubule48 ± 24 of 4 1.90Up
Larval hindgut20 ± 13 of 4 0.78Down
Larval fat body38 ± 44 of 4 1.50Up
Larval trachea9 ± 20 of 4 0.36Down
Larval carcass17 ± 11 of 4 0.68Down
S2 cells (growing)56 ± 04 of 4 2.19Up
Whole fly25 ± 14 of 4

Looking for CG3194-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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