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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31950-RA through 18771 annotations produced 1 hits



(CG31950):

Annotation Number : CG31950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051950
Gbrowse : chr2L:2878592-2878958 (+) // 100.0 //
Probeset : 1639522_at
Accessions : protein= NP_722859;, nucleotide= NM_164512;
Pathway : 0030532 // small nuclear ribonucleoprotein complex // inferred from sequence or structural similarity
FlyMine data for FBgn0051950.
VDRC has 2 RNAi stocks for FBgn0051950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 ± 24 of 4 0.50Down
Head59 ± 14 of 4 0.60Down
Eye65 ± 34 of 4 0.67Down
Thoracicoabdominal ganglion51 ± 44 of 4 0.50Down
Salivary gland96 ± 104 of 4 0.98None
Crop82 ± 84 of 4 0.80None
Midgut108 ± 74 of 4 1.10None
Tubule41 ± 14 of 4 0.40Down
Hindgut86 ± 34 of 4 0.90None
Heart72 ± 14 of 4 0.74Down
Fat body84 ± 124 of 4 0.86None
Ovary126 ± 54 of 4 1.30Up
Testis314 ± 174 of 4 3.20Up
Male accessory glands120 ± 34 of 4 1.20Up
Virgin spermatheca66 ± 74 of 4 0.67Down
Mated spermatheca72 ± 104 of 4 0.74None
Adult carcass53 ± 74 of 4 0.50Down
Larval CNS138 ± 64 of 4 1.41Up
Larval Salivary gland161 ± 134 of 4 1.64Up
Larval midgut68 ± 24 of 4 0.70Down
Larval tubule73 ± 34 of 4 0.70Down
Larval hindgut101 ± 84 of 4 1.03None
Larval fat body112 ± 104 of 4 1.10None
Larval trachea116 ± 214 of 4 1.18None
Larval carcass89 ± 54 of 4 0.91None
S2 cells (growing)123 ± 14 of 4 1.25Up
Whole fly98 ± 74 of 4

Looking for CG31950-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime