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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31974-RA through 18771 annotations produced 1 hits



(CG31974):

Annotation Number : CG31974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051974
Gbrowse : chr2L:141073-142977 (-) // 100.0 //
Probeset : 1639359_at
Accessions : protein= NP_722609;, nucleotide= NM_164370;
FlyMine data for FBgn0051974.
BioGrid reports that CG31974 interacts with CG7264 .
VDRC has 2 RNAi stocks for FBgn0051974 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain536 ± 84 of 4 1.60Up
Head315 ± 134 of 4 0.90None
Eye124 ± 174 of 4 0.37Down
Thoracicoabdominal ganglion676 ± 274 of 4 2.00Up
Salivary gland1189 ± 534 of 4 3.54Up
Crop14 ± 33 of 4 0.00Down
Midgut2267 ± 794 of 4 6.80Up
Tubule3325 ± 4844 of 4 9.90Up
Hindgut235 ± 304 of 4 0.70Down
Heart1052 ± 564 of 4 3.14Up
Fat body1038 ± 224 of 4 3.09Up
Ovary25 ± 24 of 4 0.10Down
Testis25 ± 14 of 4 0.10Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca821 ± 244 of 4 2.45Up
Mated spermatheca947 ± 254 of 4 2.82Up
Adult carcass630 ± 414 of 4 1.90Up
Larval CNS47 ± 194 of 4 0.14Down
Larval Salivary gland202 ± 154 of 4 0.60Down
Larval midgut565 ± 934 of 4 1.68None
Larval tubule186 ± 194 of 4 0.60Down
Larval hindgut89 ± 194 of 4 0.27Down
Larval fat body136 ± 264 of 4 0.40Down
Larval trachea11 ± 53 of 4 0.03Down
Larval carcass25 ± 14 of 4 0.08Down
S2 cells (growing)108 ± 34 of 4 0.32Down
Whole fly335 ± 174 of 4

Looking for CG31974-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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