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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31998-RA through 18771 annotations produced 1 hits


Annotation Number : CG31998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051998
Gbrowse : chr4:218503-226552 (-) // 100.0 //
Probeset : 1629851_at
Accessions : protein= NP_726548;, nucleotide= NM_166742;
FlyMine data for FBgn0051998.
TRiP has 1 RNAi stocks for FBgn0051998 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051998 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 44 of 4 1.10None
Head72 114 of 4 0.60Down
Eye37 34 of 4 0.33Down
Thoracicoabdominal ganglion94 134 of 4 0.80None
Salivary gland86 84 of 4 0.76None
Crop74 84 of 4 0.70Down
Midgut49 14 of 4 0.40Down
Tubule36 14 of 4 0.30Down
Hindgut45 14 of 4 0.40Down
Heart37 24 of 4 0.33Down
Fat body47 154 of 4 0.42Down
Ovary282 124 of 4 2.50Up
Testis41 14 of 4 0.40Down
Male accessory glands68 74 of 4 0.60Down
Virgin spermatheca18 04 of 4 0.16Down
Mated spermatheca25 34 of 4 0.22Down
Adult carcass46 34 of 4 0.40Down
Larval CNS150 204 of 4 1.33Up
Larval Salivary gland119 134 of 4 1.05None
Larval midgut48 44 of 4 0.42Down
Larval tubule120 74 of 4 1.10None
Larval hindgut70 64 of 4 0.62Down
Larval fat body99 24 of 4 0.90None
Larval trachea62 54 of 4 0.55Down
Larval carcass70 74 of 4 0.62Down
S2 cells (growing)192 84 of 4 1.70Up
Whole fly113 74 of 4

Looking for CG31998-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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