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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31999-RA through 18771 annotations produced 1 hits



fibrillin-like (CG31999):

Annotation Number : CG31999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051999
Gbrowse : chr4:235634-246580 (-) // 100.0 //
Probeset : 1625972_at
Accessions : protein= NP_726551;, nucleotide= NM_166745;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from sequence or structural similarity
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0051999.
BDGP gene expression has embryonic in situ data for CG31999: 17 pix of staining in 3 body parts.
Homophila reports that CG31999 is a close match (3e-11) to human gene THBD;THRM (NP_000352), a gene associated with Thrombophilia due to thrombomodulin defect (3);{Myocardial infarction, susceptibility to} (3).
BioGrid reports that CG31999 interacts with CG5009 CG5694 CG7745 CG4261 CG4976 CG4994 CG5650 CG6141 CG7939 CG9012 CG9653 CG9696 .
TRiP has 2 RNAi stocks for FBgn0051999 available for purchase.
VDRC has 3 RNAi stocks for FBgn0051999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain282 ± 124 of 4 2.20Up
Head225 ± 144 of 4 1.80Up
Eye182 ± 34 of 4 1.44Up
Thoracicoabdominal ganglion445 ± 234 of 4 3.50Up
Salivary gland19 ± 32 of 4 0.15Down
Crop763 ± 314 of 4 6.00Up
Midgut84 ± 54 of 4 0.70Down
Tubule2097 ± 1744 of 416.60Up
Hindgut387 ± 64 of 4 3.10Up
Heart626 ± 194 of 4 4.95Up
Fat body34 ± 104 of 4 0.28Down
Ovary83 ± 24 of 4 0.70Down
Testis21 ± 14 of 4 0.20Down
Male accessory glands179 ± 64 of 4 1.40Up
Virgin spermatheca34 ± 34 of 4 0.27Down
Mated spermatheca46 ± 44 of 4 0.37Down
Adult carcass207 ± 64 of 4 1.60Up
Larval CNS172 ± 104 of 4 1.36Up
Larval Salivary gland99 ± 54 of 4 0.78Down
Larval midgut64 ± 64 of 4 0.51Down
Larval tubule1901 ± 314 of 415.00Up
Larval hindgut283 ± 104 of 4 2.24Up
Larval fat body19 ± 13 of 4 0.20Down
Larval trachea592 ± 694 of 4 4.68Up
Larval carcass1061 ± 184 of 4 8.38Up
S2 cells (growing)233 ± 64 of 4 1.84Up
Whole fly126 ± 24 of 4

Looking for CG31999-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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