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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32017-RA through 18771 annotations produced 1 hits



(CG32017):

Annotation Number : CG32017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052017
Gbrowse : chr4:1158453-1166747 (-) // 100.0 //
Probeset : 1634093_at
Accessions : protein= NP_001162835; /// NP_726650;, nucleotide= NM_001169364; /// NM_166826;
FlyMine data for FBgn0052017.
VDRC has 3 RNAi stocks for FBgn0052017 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1931 ± 824 of 420.20Up
Head662 ± 624 of 4 6.90Up
Eye194 ± 114 of 4 2.03Up
Thoracicoabdominal ganglion1889 ± 194 of 419.80Up
Salivary gland7 ± 10 of 4 0.08Down
Crop4 ± 02 of 4 0.00Down
Midgut23 ± 24 of 4 0.20Down
Tubule52 ± 74 of 4 0.60Down
Hindgut32 ± 24 of 4 0.30Down
Heart7 ± 12 of 4 0.08Down
Fat body7 ± 13 of 4 0.08Down
Ovary2 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands113 ± 84 of 4 1.20None
Virgin spermatheca8 ± 14 of 4 0.09Down
Mated spermatheca13 ± 14 of 4 0.14Down
Adult carcass31 ± 44 of 4 0.30Down
Larval CNS1032 ± 1134 of 410.81Up
Larval Salivary gland5 ± 12 of 4 0.06Down
Larval midgut14 ± 24 of 4 0.15Down
Larval tubule37 ± 14 of 4 0.40Down
Larval hindgut35 ± 24 of 4 0.37Down
Larval fat body18 ± 24 of 4 0.20Down
Larval trachea107 ± 184 of 4 1.12None
Larval carcass88 ± 74 of 4 0.93None
S2 cells (growing)8 ± 04 of 4 0.09Down
Whole fly95 ± 104 of 4

Looking for CG32017-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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