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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32021-RA through 18771 annotations produced 1 hits



(CG32021):

Annotation Number : CG32021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052021
Gbrowse : chr4:927897-929810 (-) // 100.0 //
Probeset : 1630485_at
Accessions : protein= NP_726617;, nucleotide= NM_166795;
FlyMine data for FBgn0052021.
BDGP gene expression has embryonic in situ data for CG32021: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0052021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 2.20None
Head5 ± 10 of 4 3.10None
Eye4 ± 21 of 4 2.36None
Thoracicoabdominal ganglion7 ± 10 of 4 4.00Up
Salivary gland16 ± 50 of 4 8.96None
Crop12 ± 22 of 4 6.60Up
Midgut3 ± 10 of 4 2.00None
Tubule5 ± 10 of 4 3.00Up
Hindgut8 ± 10 of 4 4.20Up
Heart2 ± 10 of 4 1.53None
Fat body7 ± 10 of 4 3.72Up
Ovary4 ± 11 of 4 2.50None
Testis1 ± 00 of 4 0.80None
Male accessory glands3 ± 20 of 4 2.10None
Virgin spermatheca7 ± 20 of 4 3.85None
Mated spermatheca2 ± 00 of 4 1.43None
Adult carcass5 ± 20 of 4 2.80None
Larval CNS4 ± 00 of 4 2.55Up
Larval Salivary gland4 ± 20 of 4 2.59None
Larval midgut3 ± 20 of 4 1.92None
Larval tubule6 ± 20 of 4 3.50None
Larval hindgut8 ± 00 of 4 4.47Up
Larval fat body10 ± 20 of 4 5.60Up
Larval trachea7 ± 00 of 4 3.77Up
Larval carcass2 ± 00 of 4 1.28None
S2 cells (growing)33 ± 14 of 417.60Up
Whole fly1 ± 00 of 4

Looking for CG32021-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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