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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32031-RA through 18771 annotations produced 1 hits



insect intestinal mucin iim22 (Argk):

Annotation Number : CG32031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000116
Gbrowse : chr3L:9041961-9059105 (-) // 100.0 //
Probeset : 1625633_a_at
Accessions : protein= NP_001097555; /// NP_001097556; /// NP_523988; /// NP_729446; /// NP_729447; /// NP_729448;, nucleotide= NM_001104085; /// NM_001104086; /// NM_079264; /// NM_168311; /// NM_168312; /// NM_168313;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0000116.
BDGP gene expression has embryonic in situ data for Argk: 32 pix of staining in 11 body parts.
BioGrid reports that CG32031 interacts with CG6011 CG3335 .
TRiP has 3 RNAi stocks for FBgn0000116 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000116 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3224 724 of 4 1.40Up
Head3401 884 of 4 1.40Up
Eye3384 1534 of 4 1.43Up
Thoracicoabdominal ganglion3847 1154 of 4 1.60Up
Salivary gland924 424 of 4 0.39Down
Crop4926 2354 of 4 2.10Up
Midgut3572 714 of 4 1.50Up
Tubule1589 1674 of 4 0.70Down
Hindgut4430 1374 of 4 1.90Up
Heart3723 1734 of 4 1.58Up
Fat body211 414 of 4 0.09Down
Ovary741 164 of 4 0.30Down
Testis716 204 of 4 0.30Down
Male accessory glands852 594 of 4 0.40Down
Virgin spermatheca440 104 of 4 0.19Down
Mated spermatheca602 434 of 4 0.26Down
Adult carcass4501 2314 of 4 1.90Up
Larval CNS2162 624 of 4 0.92Down
Larval Salivary gland1003 364 of 4 0.43Down
Larval midgut4081 1644 of 4 1.73Up
Larval tubule1335 834 of 4 0.60Down
Larval hindgut4477 614 of 4 1.90Up
Larval fat body159 54 of 4 0.10Down
Larval trachea1095 5664 of 4 0.46Down
Larval carcass4969 4204 of 4 2.11Up
S2 cells (growing)15 04 of 4 0.01Down
Whole fly2360 504 of 4

Looking for CG32031-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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