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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32041-RB through 18771 annotations produced 1 hits



heat shock protein hsp22 /// Gene 2 (Hsp22 /// Hsp67Bb):

Annotation Number : CG32041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001223 /// FBgn0001228
Gbrowse : chr3L:9366030-9368070 (+) // 100.0 //
Probeset : 1629061_s_at
Accessions : protein= NP_001027114; /// NP_001027115; /// NP_001027116; /// NP_001027117;, nucleotide= NM_001031943; /// NM_001031944; /// NM_001031945; /// NM_001031946;
FlyMine data for FBgn0001223 /// FBgn0001228.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 ± 64 of 4 0.40Down
Head69 ± 104 of 4 0.80None
Eye286 ± 884 of 4 3.28None
Thoracicoabdominal ganglion27 ± 32 of 4 0.30Down
Salivary gland7 ± 50 of 4 0.09Down
Crop131 ± 84 of 4 1.50Up
Midgut49 ± 63 of 4 0.60Down
Tubule1604 ± 3744 of 418.40Up
Hindgut26 ± 31 of 4 0.30Down
Heart117 ± 154 of 4 1.35None
Fat body22 ± 10 of 4 0.26Down
Ovary125 ± 54 of 4 1.40Up
Testis36 ± 54 of 4 0.40Down
Male accessory glands14 ± 40 of 4 0.20Down
Virgin spermatheca11 ± 60 of 4 0.14Down
Mated spermatheca67 ± 231 of 4 0.77None
Adult carcass174 ± 104 of 4 2.00Up
Larval CNS51 ± 224 of 4 0.59Down
Larval Salivary gland67 ± 273 of 4 0.78None
Larval midgut63 ± 183 of 4 0.72None
Larval tubule665 ± 264 of 4 7.60Up
Larval hindgut41 ± 92 of 4 0.47Down
Larval fat body159 ± 334 of 4 1.80None
Larval trachea11 ± 60 of 4 0.13Down
Larval carcass26 ± 40 of 4 0.30Down
S2 cells (growing)181 ± 124 of 4 2.07Up
Whole fly87 ± 64 of 4

Looking for CG32041-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime