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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32047-RA through 18771 annotations produced 1 hits



(CG33696):

Annotation Number : CG32047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053696
Gbrowse : chr3L:9643441-9647138 (+) // 96.6 //
Probeset : 1631364_at
Accessions : protein= NP_001027122;, nucleotide= NM_001031951;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0053696.
TRiP has 1 RNAi stocks for FBgn0053696 available for purchase.
VDRC has 4 RNAi stocks for FBgn0053696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 14 of 416.20Up
Head14 ± 33 of 4 3.40Up
Eye4 ± 00 of 4 1.04None
Thoracicoabdominal ganglion25 ± 24 of 4 6.10Up
Salivary gland7 ± 30 of 4 1.80None
Crop5 ± 20 of 4 1.20None
Midgut2 ± 10 of 4 0.60None
Tubule4 ± 10 of 4 1.10None
Hindgut3 ± 10 of 4 0.90None
Heart4 ± 10 of 4 1.08None
Fat body9 ± 02 of 4 2.12None
Ovary1 ± 00 of 4 0.30None
Testis5 ± 10 of 4 1.40None
Male accessory glands6 ± 21 of 4 1.60None
Virgin spermatheca7 ± 12 of 4 1.82None
Mated spermatheca7 ± 10 of 4 1.67None
Adult carcass12 ± 20 of 4 2.90None
Larval CNS17 ± 24 of 4 4.14Up
Larval Salivary gland5 ± 00 of 4 1.18None
Larval midgut5 ± 20 of 4 1.18None
Larval tubule3 ± 10 of 4 0.90None
Larval hindgut3 ± 10 of 4 0.78None
Larval fat body9 ± 20 of 4 2.20None
Larval trachea3 ± 20 of 4 0.85None
Larval carcass4 ± 10 of 4 1.02None
S2 cells (growing)1 ± 00 of 4 0.39None
Whole fly4 ± 20 of 4

Looking for CG32047-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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