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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32062-RB through 18771 annotations produced 1 hits



():

Annotation Number : CG32062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:10509104-10586521 (+) // 100.0 //
Probeset : 1626884_a_at
Accessions : protein= NP_001097572; /// NP_001097573; /// NP_001097574; /// NP_729614; /// NP_729615;, nucleotide= NM_001104102; /// NM_001104103; /// NM_001104104; /// NM_168412; /// NM_168413;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain641 224 of 4 8.10Up
Head184 124 of 4 2.30Up
Eye138 64 of 4 1.75Up
Thoracicoabdominal ganglion546 144 of 4 6.90Up
Salivary gland28 54 of 4 0.36Down
Crop269 104 of 4 3.40Up
Midgut22 24 of 4 0.30Down
Tubule11 03 of 4 0.10Down
Hindgut89 54 of 4 1.10None
Heart184 94 of 4 2.34Up
Fat body185 124 of 4 2.35Up
Ovary40 24 of 4 0.50Down
Testis11 14 of 4 0.10Down
Male accessory glands37 24 of 4 0.50Down
Virgin spermatheca237 84 of 4 3.01Up
Mated spermatheca236 134 of 4 3.00Up
Adult carcass199 54 of 4 2.50Up
Larval CNS614 254 of 4 7.77Up
Larval Salivary gland16 24 of 4 0.21Down
Larval midgut24 34 of 4 0.31Down
Larval tubule9 14 of 4 0.10Down
Larval hindgut78 34 of 4 1.00None
Larval fat body243 164 of 4 3.10Up
Larval trachea774 984 of 4 9.80Up
Larval carcass191 194 of 4 2.42Up
S2 cells (growing)56 04 of 4 0.72Down
Whole fly79 34 of 4

Looking for CG32062-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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