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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32069-RA through 18771 annotations produced 1 hits



(CG32069):

Annotation Number : CG32069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052069
Gbrowse : chr3L:11055272-11055643 (-) // 100.0 //
Probeset : 1635751_at
Accessions : protein= NP_729654;, nucleotide= NM_168435;
FlyMine data for FBgn0052069.
VDRC has 1 RNAi stocks for FBgn0052069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 24 of 4 0.80Down
Head193 ± 34 of 4 1.10None
Eye207 ± 114 of 4 1.15None
Thoracicoabdominal ganglion143 ± 44 of 4 0.80Down
Salivary gland722 ± 284 of 4 4.01Up
Crop159 ± 54 of 4 0.90None
Midgut202 ± 144 of 4 1.10None
Tubule96 ± 54 of 4 0.50Down
Hindgut142 ± 14 of 4 0.80Down
Heart275 ± 104 of 4 1.53Up
Fat body275 ± 214 of 4 1.53Up
Ovary194 ± 34 of 4 1.10None
Testis75 ± 34 of 4 0.40Down
Male accessory glands563 ± 774 of 4 3.10Up
Virgin spermatheca250 ± 54 of 4 1.39Up
Mated spermatheca322 ± 254 of 4 1.79Up
Adult carcass162 ± 74 of 4 0.90None
Larval CNS246 ± 174 of 4 1.37Up
Larval Salivary gland1289 ± 314 of 4 7.16Up
Larval midgut162 ± 104 of 4 0.90None
Larval tubule151 ± 54 of 4 0.80None
Larval hindgut203 ± 124 of 4 1.13None
Larval fat body124 ± 114 of 4 0.70Down
Larval trachea291 ± 314 of 4 1.62Up
Larval carcass237 ± 104 of 4 1.32Up
S2 cells (growing)301 ± 74 of 4 1.67Up
Whole fly180 ± 94 of 4

Looking for CG32069-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime