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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32075-RA through 18771 annotations produced 1 hits



(CG32075):

Annotation Number : CG32075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052075
Gbrowse : chr3L:11055820-11058037 (-) // 100.0 //
Probeset : 1622895_at
Accessions : protein= NP_648428;, nucleotide= NM_140171;
FlyMine data for FBgn0052075.
BioGrid reports that CG32075 interacts with CG9868 .
VDRC has 3 RNAi stocks for FBgn0052075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 34 of 4 0.70Down
Head61 ± 24 of 4 0.50Down
Eye56 ± 24 of 4 0.49Down
Thoracicoabdominal ganglion83 ± 34 of 4 0.70Down
Salivary gland79 ± 74 of 4 0.68Down
Crop69 ± 54 of 4 0.60Down
Midgut64 ± 44 of 4 0.60Down
Tubule73 ± 103 of 4 0.60Down
Hindgut50 ± 44 of 4 0.40Down
Heart55 ± 44 of 4 0.48Down
Fat body92 ± 114 of 4 0.79Down
Ovary227 ± 34 of 4 2.00Up
Testis40 ± 14 of 4 0.30Down
Male accessory glands141 ± 84 of 4 1.20Up
Virgin spermatheca77 ± 14 of 4 0.67Down
Mated spermatheca102 ± 64 of 4 0.88None
Adult carcass58 ± 24 of 4 0.50Down
Larval CNS160 ± 54 of 4 1.38Up
Larval Salivary gland131 ± 14 of 4 1.13Up
Larval midgut49 ± 44 of 4 0.43Down
Larval tubule59 ± 34 of 4 0.50Down
Larval hindgut62 ± 04 of 4 0.54Down
Larval fat body60 ± 24 of 4 0.50Down
Larval trachea113 ± 124 of 4 0.98None
Larval carcass87 ± 114 of 4 0.76None
S2 cells (growing)142 ± 64 of 4 1.22Up
Whole fly116 ± 24 of 4

Looking for CG32075-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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