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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32081-RA through 18771 annotations produced 1 hits



(CG32081):

Annotation Number : CG32081
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052081
Gbrowse : chr3L:11020678-11022533 (+) // 100.0 //
Probeset : 1628348_at
Accessions : protein= NP_729646;, nucleotide= NM_168430;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0052081.
VDRC has 2 RNAi stocks for FBgn0052081 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye3 11 of 4 0.02Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland2 00 of 4 0.02Down
Crop1 00 of 4 0.00Down
Midgut5 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut4 10 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body2 20 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis1672 224 of 410.60Up
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca3 00 of 4 0.02Down
Mated spermatheca5 10 of 4 0.03Down
Adult carcass8 41 of 4 0.10Down
Larval CNS1 10 of 4 0.01Down
Larval Salivary gland3 10 of 4 0.02Down
Larval midgut4 10 of 4 0.03Down
Larval tubule4 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body246 1244 of 4 1.60None
Larval trachea8 121 of 4 0.06Down
Larval carcass5 20 of 4 0.03Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly158 114 of 4

Looking for CG32081-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime