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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32082-RA through 18771 annotations produced 1 hits



(CG32082):

Annotation Number : CG32082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052082
Gbrowse : chr3L:11129148-11156141 (+) // 100.0 //
Probeset : 1623773_at
Accessions : protein= NP_001097582; /// NP_001097583; /// NP_729679;, nucleotide= NM_001104112; /// NM_001104113; /// NM_168448;
Interpro : 0004871 // signal transducer activity // inferred from sequence or structural similarity /// 0008093 // cytoskeletal ada
FlyMine data for FBgn0052082.
VDRC has 5 RNAi stocks for FBgn0052082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 1.00None
Head24 24 of 4 3.80Up
Eye29 14 of 4 4.50Up
Thoracicoabdominal ganglion4 10 of 4 0.60None
Salivary gland8 30 of 4 1.36None
Crop19 13 of 4 3.00Up
Midgut3 10 of 4 0.50None
Tubule2 10 of 4 0.40Down
Hindgut26 14 of 4 4.00Up
Heart3 00 of 4 0.50Down
Fat body7 10 of 4 1.08None
Ovary1 10 of 4 0.20Down
Testis7 11 of 4 1.20None
Male accessory glands4 20 of 4 0.70None
Virgin spermatheca3 10 of 4 0.56None
Mated spermatheca2 00 of 4 0.33Down
Adult carcass18 33 of 4 2.80Up
Larval CNS5 12 of 4 0.82None
Larval Salivary gland5 10 of 4 0.87None
Larval midgut3 00 of 4 0.46Down
Larval tubule2 10 of 4 0.40Down
Larval hindgut32 14 of 4 4.94Up
Larval fat body5 10 of 4 0.80None
Larval trachea64 84 of 4 9.85Up
Larval carcass13 32 of 4 2.03None
S2 cells (growing)4 10 of 4 0.63None
Whole fly6 01 of 4

Looking for CG32082-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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