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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32090-RA through 18771 annotations produced 1 hits



Vha16-3 (Vha16-3):

Annotation Number : CG32090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028667
Gbrowse : chr3L:11466507-11466984 (+) // 100.0 //
Probeset : 1624514_at
Accessions : protein= NP_729706;, nucleotide= NM_168458;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0000221 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0028667.
VDRC has 3 RNAi stocks for FBgn0028667 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head2 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland6 ± 40 of 4 0.35None
Crop4 ± 10 of 4 0.20Down
Midgut2 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.09Down
Fat body8 ± 20 of 4 0.43Down
Ovary2 ± 00 of 4 0.10Down
Testis212 ± 144 of 411.20Up
Male accessory glands6 ± 20 of 4 0.30Down
Virgin spermatheca4 ± 20 of 4 0.24Down
Mated spermatheca4 ± 10 of 4 0.25Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS3 ± 00 of 4 0.19Down
Larval Salivary gland5 ± 30 of 4 0.31Down
Larval midgut4 ± 10 of 4 0.25Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut2 ± 10 of 4 0.14Down
Larval fat body55 ± 184 of 4 2.90None
Larval trachea1 ± 10 of 4 0.10Down
Larval carcass6 ± 10 of 4 0.33Down
S2 cells (growing)8 ± 00 of 4 0.43Down
Whole fly19 ± 03 of 4

Looking for CG32090-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime