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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32092-RB through 18771 annotations produced 2 hits



CG32092 (CG42255):

Annotation Number : CG32092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259140
Gbrowse : chr3L:11795184-11803564 (-) // 100.0 //
Probeset : 1636984_at
Accessions : protein= NP_729748;, nucleotide= NM_168477;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion b
FlyMine data for FBgn0259140.
Homophila reports that CG32092 is a close match (1e-12) to human gene MFRP (NP_113621), a gene associated with Microphthalmia, posterior, with retinitis pigmentosa, foveoschisis, and optic disc drusen, 611040 (3).
VDRC has 5 RNAi stocks for FBgn0259140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.60None
Head3 10 of 4 0.60None
Eye1 00 of 4 0.19None
Thoracicoabdominal ganglion7 11 of 4 1.30None
Salivary gland8 30 of 4 1.63None
Crop4 10 of 4 0.80None
Midgut12 10 of 4 2.30Up
Tubule6 20 of 4 1.20None
Hindgut14 22 of 4 2.60Up
Heart2090 924 of 4394.42Up
Fat body71 214 of 413.52Up
Ovary2 00 of 4 0.50None
Testis3 10 of 4 0.60None
Male accessory glands4 10 of 4 0.80None
Virgin spermatheca9 11 of 4 1.70None
Mated spermatheca8 21 of 4 1.50None
Adult carcass125 104 of 423.70Up
Larval CNS13 14 of 4 2.47Up
Larval Salivary gland41 64 of 4 7.77Up
Larval midgut43 34 of 4 8.22Up
Larval tubule70 54 of 413.20Up
Larval hindgut2 00 of 4 0.46None
Larval fat body24 43 of 4 4.70Up
Larval trachea17 301 of 4 3.24None
Larval carcass85 104 of 416.08Up
S2 cells (growing)2 00 of 4 0.52None
Whole fly5 10 of 4



CG32092 (CG42255):

Annotation Number : CG32094
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259140
Gbrowse : chr3L:11804141-11807855 (-) // 100.0 //
Probeset : 1639078_at
Accessions : protein= NP_729748;, nucleotide= NM_168477;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion b
FlyMine data for FBgn0259140.
Homophila reports that CG32094 is a close match (6e-11) to human gene ADMCKD2;FJHN;HNFJ;MCKD2;UMOD (NP_003352), a gene associated with Glomerulocystic kidney disease with hyperuricemia and isosthenuria, 609886 (3);Hyperuricemic nephropathy, familial juvenile, 162000 (3);Medullary cystic kidney disease 2, 603860 (3).
VDRC has 5 RNAi stocks for FBgn0259140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.70None
Head2 10 of 4 3.30None
Eye0 00 of 4 1.06None
Thoracicoabdominal ganglion0 00 of 4 1.00None
Salivary gland8 10 of 410.20Up
Crop3 10 of 4 3.40None
Midgut2 00 of 4 3.30None
Tubule3 00 of 4 3.50Up
Hindgut1 00 of 4 1.70None
Heart6 00 of 4 7.17Up
Fat body1 00 of 4 1.69None
Ovary2 00 of 4 2.40None
Testis1 00 of 4 1.30None
Male accessory glands3 10 of 4 3.60None
Virgin spermatheca1 10 of 4 2.17None
Mated spermatheca2 10 of 4 2.66None
Adult carcass4 20 of 4 5.60None
Larval CNS1 10 of 4 1.80None
Larval Salivary gland1 00 of 4 2.11None
Larval midgut2 00 of 4 2.54None
Larval tubule2 10 of 4 3.10None
Larval hindgut2 10 of 4 3.03None
Larval fat body5 10 of 4 6.70None
Larval trachea2 10 of 4 2.51None
Larval carcass2 00 of 4 2.49None
S2 cells (growing)0 00 of 4 0.71None
Whole fly0 00 of 4

Looking for CG32092-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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