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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32096-RD through 18771 annotations produced 1 hits



Antisocial (rols):

Annotation Number : CG32096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041096
Gbrowse : chr3L:12001323-12049544 (-) // 100.0 //
Probeset : 1624004_s_at
Accessions : protein= NP_648542; /// NP_729778; /// NP_729779; /// NP_729780; /// NP_729781;, nucleotide= NM_140285; /// NM_168487; /// NM_168488; /// NM_168489; /// NM_168490;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005912 // adherens junction // inferred from direct assay /// 00
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0041096.
BDGP gene expression has embryonic in situ data for rols: 68 pix of staining in 17 body parts.
Homophila reports that CG32096 is a close match (4e-12) to human gene ESPN (NP_113663), a gene associated with Deafness, autosomal recessive 36, 609006 (3);Deafness, neurosensory, without vestibular involvement, autosomal dominant (3).
BioGrid reports that CG32096 interacts with CG8417 CG3325 CG3621 CG4065 CG4239 CG4878 CG5502 CG6800 CG7622 CG8229 CG9277 CG9496 CG9917 CG33103 CG3653 CG10379 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 24 of 4 1.50Up
Head58 24 of 4 1.70Up
Eye36 44 of 4 1.06None
Thoracicoabdominal ganglion45 34 of 4 1.30None
Salivary gland20 20 of 4 0.58Down
Crop21 22 of 4 0.60Down
Midgut61 34 of 4 1.80Up
Tubule141 174 of 4 4.10Up
Hindgut77 14 of 4 2.20Up
Heart19 14 of 4 0.55Down
Fat body32 74 of 4 0.94None
Ovary17 13 of 4 0.50Down
Testis10 02 of 4 0.30Down
Male accessory glands82 54 of 4 2.40Up
Virgin spermatheca123 54 of 4 3.54Up
Mated spermatheca144 124 of 4 4.14Up
Adult carcass47 34 of 4 1.40Up
Larval CNS51 64 of 4 1.49Up
Larval Salivary gland32 44 of 4 0.93None
Larval midgut42 24 of 4 1.21None
Larval tubule87 24 of 4 2.50Up
Larval hindgut92 44 of 4 2.65Up
Larval fat body10 20 of 4 0.30Down
Larval trachea32 14 of 4 0.92Down
Larval carcass33 34 of 4 0.97None
S2 cells (growing)2 10 of 4 0.06Down
Whole fly34 04 of 4

Looking for CG32096-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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