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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3212-RA through 18771 annotations produced 1 hits



"Scavenger receptor class C ( type IV"):

Annotation Number : CG3212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr2L:3522593-3523960 (-) // 100.0 //
Probeset : 1624817_at
Accessions : protein= , nucleotide= NP_608789;
Pathway : 0006952 // defense response // non-traceable author statement /// 0006955 // immune response // inferred from electronic
Interpro : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
FlyMine data for full length.
BioGrid reports that CG3212 interacts with CG3953 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.60None
Head2 ± 10 of 4 0.60None
Eye0 ± 00 of 4 0.18None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 1.62None
Crop1 ± 00 of 4 0.30None
Midgut1 ± 00 of 4 0.30None
Tubule281 ± 134 of 464.40Up
Hindgut3 ± 10 of 4 0.80None
Heart2 ± 10 of 4 0.66None
Fat body8 ± 70 of 4 1.91None
Ovary0 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.50None
Male accessory glands2 ± 00 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.22None
Mated spermatheca1 ± 00 of 4 0.26None
Adult carcass1 ± 10 of 4 0.40None
Larval CNS1 ± 00 of 4 0.26None
Larval Salivary gland1 ± 00 of 4 0.22None
Larval midgut2 ± 00 of 4 0.46None
Larval tubule786 ± 234 of 4179.80Up
Larval hindgut5 ± 10 of 4 1.24None
Larval fat body1 ± 00 of 4 0.30None
Larval trachea6 ± 40 of 4 1.59None
Larval carcass7 ± 00 of 4 1.63None
S2 cells (growing)1 ± 00 of 4 0.33None
Whole fly4 ± 10 of 4

Looking for CG3212-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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