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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32120-RA through 18771 annotations produced 1 hits



senseless (sens):

Annotation Number : CG32120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002573
Gbrowse : chr3L:13389328-13394225 (-) // 100.0 //
Probeset : 1632294_at
Accessions : protein= NP_524818;, nucleotide= NM_080079;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0002573.
Homophila reports that CG32120 is a close match (5e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG32120 interacts with CG8365 CG6348 CG3827 CG8544 CG8544 .
TRiP has 1 RNAi stocks for FBgn0002573 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002573 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head5 ± 12 of 4 0.70None
Eye25 ± 14 of 4 3.23Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.30None
Salivary gland1184 ± 274 of 4152.86Up
Crop16 ± 13 of 4 2.10Up
Midgut3 ± 20 of 4 0.40None
Tubule1 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.14Down
Fat body5 ± 30 of 4 0.67None
Ovary1 ± 00 of 4 0.20Down
Testis53 ± 04 of 4 6.90Up
Male accessory glands5 ± 00 of 4 0.70None
Virgin spermatheca3 ± 10 of 4 0.48None
Mated spermatheca2 ± 00 of 4 0.25None
Adult carcass4 ± 10 of 4 0.60None
Larval CNS2 ± 12 of 4 0.33None
Larval Salivary gland1089 ± 364 of 4140.57Up
Larval midgut3 ± 10 of 4 0.49None
Larval tubule2 ± 00 of 4 0.30None
Larval hindgut3 ± 10 of 4 0.47None
Larval fat body11 ± 61 of 4 1.50None
Larval trachea18 ± 33 of 4 2.35Up
Larval carcass1 ± 00 of 4 0.16Down
S2 cells (growing)1 ± 00 of 4 0.23None
Whole fly7 ± 12 of 4

Looking for CG32120-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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