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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32143-RA through 18771 annotations produced 1 hits



omega (ome):

Annotation Number : CG32143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259175
Gbrowse : chr3L:14673476-14674193 (+) // 100.0 //
Probeset : 1633832_a_at
Accessions : protein= NP_001097606; /// NP_001137955; /// NP_524739;, nucleotide= NM_001104136; /// NM_001144483; /// NM_080000;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008236 // serine-type peptidase activity // inferr
FlyMine data for FBgn0259175.
VDRC has 5 RNAi stocks for FBgn0259175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head2 10 of 4 1.50None
Eye3 10 of 4 2.01None
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland70 154 of 440.58Up
Crop19 24 of 411.00Up
Midgut3 10 of 4 2.00None
Tubule13 12 of 4 7.80Up
Hindgut26 24 of 415.30Up
Heart3 10 of 4 1.99None
Fat body3 20 of 4 2.03None
Ovary0 00 of 4 0.20None
Testis2 10 of 4 1.60None
Male accessory glands2 00 of 4 1.10None
Virgin spermatheca1 10 of 4 1.04None
Mated spermatheca1 00 of 4 0.99None
Adult carcass5 10 of 4 3.10None
Larval CNS0 00 of 4 0.23None
Larval Salivary gland70 174 of 441.07Up
Larval midgut1 00 of 4 0.65None
Larval tubule70 44 of 440.80Up
Larval hindgut16 23 of 4 9.51Up
Larval fat body3 20 of 4 1.90None
Larval trachea2 30 of 4 1.42None
Larval carcass0 00 of 4 0.49None
S2 cells (growing)1 00 of 4 0.87None
Whole fly1 00 of 4

Looking for CG32143-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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