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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32146-RA through 18771 annotations produced 1 hits



Dally-like (dlp):

Annotation Number : CG32146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041604
Gbrowse : chr3L:14625719-14664716 (+) // 100.0 //
Probeset : 1636974_at
Accessions : protein= NP_524071; /// NP_996075;, nucleotide= NM_079347; /// NM_206353;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005578 // proteinaceous extracel
Interpro : 0017147 // Wnt-protein binding // inferred from direct assay /// 0043395 // heparan sulfate proteoglycan binding // infe
FlyMine data for FBgn0041604.
BDGP gene expression has embryonic in situ data for dlp: 22 pix of staining in 28 body parts.
Homophila reports that CG32146 is a close match (7e-16) to human gene GPC3;SDYS;SGBS1 (NP_004475), a gene associated with Simpson-Golabi-Behmel syndrome, type 1, 312870 (3);Wilms tumor, somatic, 194070 (3).
BioGrid reports that CG32146 interacts with CG11579 CG4889 CG4974 .
TRiP has 2 RNAi stocks for FBgn0041604 available for purchase.
VDRC has 3 RNAi stocks for FBgn0041604 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain79 14 of 4 0.80None
Head143 74 of 4 1.40Up
Eye408 204 of 4 3.88Up
Thoracicoabdominal ganglion79 14 of 4 0.80None
Salivary gland58 24 of 4 0.55Down
Crop373 74 of 4 3.50Up
Midgut105 64 of 4 1.00None
Tubule69 24 of 4 0.70Down
Hindgut369 114 of 4 3.50Up
Heart24 14 of 4 0.23Down
Fat body21 24 of 4 0.21Down
Ovary304 24 of 4 2.90Up
Testis43 04 of 4 0.40Down
Male accessory glands31 44 of 4 0.30Down
Virgin spermatheca68 34 of 4 0.65Down
Mated spermatheca81 94 of 4 0.77None
Adult carcass31 44 of 4 0.30Down
Larval CNS319 164 of 4 3.03Up
Larval Salivary gland83 34 of 4 0.79None
Larval midgut176 84 of 4 1.68Up
Larval tubule284 154 of 4 2.70Up
Larval hindgut479 74 of 4 4.55Up
Larval fat body17 43 of 4 0.20Down
Larval trachea650 294 of 4 6.17Up
Larval carcass122 144 of 4 1.16None
S2 cells (growing)34 24 of 4 0.33Down
Whole fly105 124 of 4

Looking for CG32146-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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