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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32156-RE through 18771 annotations produced 1 hits



MLC-phosphatase (Mbs):

Annotation Number : CG32156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005536
Gbrowse : chr3L:16066466-16072709 (+) // 100.0 //
Probeset : 1630456_at
Accessions : protein= NP_001097613; /// NP_001097614; /// NP_001097615; /// NP_648830; /// NP_730099; /// NP_730100; /// NP_730101;, nucleotide= NM_001104143; /// NM_001104144; /// NM_001104145; /// NM_140573; /// NM_168646; /// NM_168647; /// NM_168648;
Pathway : 0017023 // myosin phosphatase complex // inferred from sequence or structural similarity /// 0017023 // myosin phosphata
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0005536.
BDGP gene expression has embryonic in situ data for Mbs: 14 pix of staining in 5 body parts.
Homophila reports that CG32156 is a close match (8e-12) to human gene HPC1;PRCA1;RNASEL;RNS4 (NP_066956), a gene associated with Prostate cancer 1, 176807, 601518 (3).
BioGrid reports that CG32156 interacts with CG4767 CG4394 CG7809 CG9699 CG9924 CG2248 CG8416 CG8416 CG8416 CG8416 CG9635 CG9774 CG15792 .
TRiP has 2 RNAi stocks for FBgn0005536 available for purchase.
VDRC has 1 RNAi stocks for FBgn0005536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain225 64 of 4 2.50Up
Head213 104 of 4 2.30Up
Eye139 24 of 4 1.52Up
Thoracicoabdominal ganglion154 54 of 4 1.70Up
Salivary gland35 34 of 4 0.39Down
Crop763 144 of 4 8.40Up
Midgut195 94 of 4 2.10Up
Tubule66 14 of 4 0.70Down
Hindgut422 54 of 4 4.60Up
Heart662 514 of 4 7.25Up
Fat body56 74 of 4 0.61Down
Ovary9 14 of 4 0.10Down
Testis29 14 of 4 0.30Down
Male accessory glands171 74 of 4 1.90Up
Virgin spermatheca51 24 of 4 0.57Down
Mated spermatheca87 154 of 4 0.96None
Adult carcass265 214 of 4 2.90Up
Larval CNS71 84 of 4 0.79Down
Larval Salivary gland30 24 of 4 0.33Down
Larval midgut95 174 of 4 1.04None
Larval tubule47 24 of 4 0.50Down
Larval hindgut200 64 of 4 2.19Up
Larval fat body22 23 of 4 0.20Down
Larval trachea14 54 of 4 0.16Down
Larval carcass202 234 of 4 2.21Up
S2 cells (growing)15 04 of 4 0.17Down
Whole fly91 34 of 4

Looking for CG32156-RE. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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