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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG32161-RA through 18771 annotations produced 1 hits


(CG32161):

Annotation Number : CG32161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052161
Gbrowse : chr3L:16839326-16840095 (+) // 100.0 //
Probeset : 1638373_at
Accessions : protein= NP_730205;, nucleotide= NM_168688;
FlyMine data for FBgn0052161.
VDRC has 2 RNAi stocks for FBgn0052161 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.05Down
Crop1 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.03Down
Fat body3 ± 10 of 4 0.04Down
Ovary2 ± 10 of 4 0.00Down
Testis863 ± 214 of 411.50Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 20 of 4 0.07Down
Mated spermatheca4 ± 10 of 4 0.06Down
Adult carcass11 ± 20 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut3 ± 20 of 4 0.05Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.04Down
Larval fat body41 ± 183 of 4 0.50None
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass4 ± 10 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly75 ± 24 of 4

Looking for CG32161-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime