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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32174-RB through 18771 annotations produced 1 hits



/// UDP-sugar transporter in 74C (CG32174 /// frc):

Annotation Number : CG32174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042641 /// FBgn0052174
Gbrowse : chr3L:17422246-17426689 (-) // 100.0 //
Probeset : 1640286_at
Accessions : protein= NP_001137962; /// NP_524126; /// NP_648977; /// NP_730270;, nucleotide= NM_001144490; /// NM_079402; /// NM_140720; /// NM_168732;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence
Interpro : 0005457 // GDP-fucose transmembrane transporter activity // inferred from direct assay /// 0005458 // GDP-mannose transm
FlyMine data for FBgn0042641 /// FBgn0052174.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 64 of 4 2.50Up
Head59 44 of 4 1.30None
Eye128 64 of 4 2.72Up
Thoracicoabdominal ganglion104 34 of 4 2.20Up
Salivary gland66 60 of 4 1.39None
Crop47 34 of 4 1.00None
Midgut103 54 of 4 2.20Up
Tubule52 34 of 4 1.10None
Hindgut76 34 of 4 1.60Up
Heart114 64 of 4 2.42Up
Fat body57 134 of 4 1.22None
Ovary37 04 of 4 0.80None
Testis25 34 of 4 0.50Down
Male accessory glands20 11 of 4 0.40Down
Virgin spermatheca29 34 of 4 0.63Down
Mated spermatheca26 24 of 4 0.55Down
Adult carcass65 43 of 4 1.40Up
Larval CNS97 64 of 4 2.05Up
Larval Salivary gland67 64 of 4 1.41Up
Larval midgut64 34 of 4 1.36Up
Larval tubule68 24 of 4 1.40Up
Larval hindgut64 14 of 4 1.36Up
Larval fat body33 21 of 4 0.70Down
Larval trachea98 74 of 4 2.08Up
Larval carcass70 84 of 4 1.48None
S2 cells (growing)59 34 of 4 1.26None
Whole fly47 44 of 4

Looking for CG32174-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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