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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3218-RA through 18771 annotations produced 1 hits



female sterile (1) K10 (fs(1)K10):

Annotation Number : CG3218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000810
Gbrowse : chrX:2136136-2140074 (+) // 99.84 //
Probeset : 1630806_at
Accessions : protein= NP_477491;, nucleotide= NM_058143;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0000810.
BioGrid reports that CG3218 interacts with CG4887 CG5358 CG8947 CG11924 CG17610 .
TRiP has 2 RNAi stocks for FBgn0000810 available for purchase.
VDRC has 1 RNAi stocks for FBgn0000810 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 24 of 4 1.30Up
Head68 44 of 4 0.80Down
Eye60 14 of 4 0.71Down
Thoracicoabdominal ganglion89 14 of 4 1.10None
Salivary gland139 74 of 4 1.63Up
Crop91 54 of 4 1.10None
Midgut54 34 of 4 0.60Down
Tubule44 04 of 4 0.50Down
Hindgut80 24 of 4 0.90None
Heart33 34 of 4 0.39Down
Fat body66 44 of 4 0.78Down
Ovary197 24 of 4 2.30Up
Testis16 14 of 4 0.20Down
Male accessory glands105 54 of 4 1.20Up
Virgin spermatheca76 44 of 4 0.90None
Mated spermatheca80 34 of 4 0.95None
Adult carcass54 04 of 4 0.60Down
Larval CNS161 124 of 4 1.89Up
Larval Salivary gland105 34 of 4 1.23Up
Larval midgut55 34 of 4 0.65Down
Larval tubule60 44 of 4 0.70Down
Larval hindgut108 14 of 4 1.27Up
Larval fat body74 44 of 4 0.90None
Larval trachea74 54 of 4 0.87None
Larval carcass97 54 of 4 1.14None
S2 cells (growing)76 24 of 4 0.89None
Whole fly85 44 of 4

Looking for CG3218-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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