Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32184-RA through 18771 annotations produced 1 hits



Nedd4 (Nedd4):

Annotation Number : CG32184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259174
Gbrowse : chr3L:17534715-17535196 (+) // 100.0 //
Probeset : 1638288_at
Accessions : protein= NP_001137964; /// NP_001137965; /// NP_648993; /// NP_730282; /// NP_730283; /// NP_730284; /// NP_996116;, nucleotide= NM_001144492; /// NM_001144493; /// NM_140736; /// NM_168736; /// NM_168737; /// NM_168738; /// NM_168738; /// NM_206394;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0259174.
TRiP has 2 RNAi stocks for FBgn0259174 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259174 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head6 10 of 4 4.20None
Eye4 10 of 4 3.31None
Thoracicoabdominal ganglion2 10 of 4 1.40None
Salivary gland3 20 of 4 2.59None
Crop1 10 of 4 1.30None
Midgut4 10 of 4 3.30None
Tubule2 00 of 4 1.60None
Hindgut2 10 of 4 1.70None
Heart2 00 of 4 1.95None
Fat body4 20 of 4 3.36None
Ovary0 00 of 4 0.40None
Testis1 00 of 4 1.10None
Male accessory glands5 10 of 4 3.50None
Virgin spermatheca7 10 of 4 4.90Up
Mated spermatheca2 10 of 4 1.66None
Adult carcass3 10 of 4 2.10None
Larval CNS1 10 of 4 0.88None
Larval Salivary gland2 10 of 4 1.60None
Larval midgut2 00 of 4 1.95None
Larval tubule1 00 of 4 1.20None
Larval hindgut2 01 of 4 1.41None
Larval fat body3 20 of 4 2.40None
Larval trachea2 10 of 4 1.52None
Larval carcass1 00 of 4 1.16None
S2 cells (growing)1 00 of 4 1.24None
Whole fly1 00 of 4

Looking for CG32184-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime