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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3219-RA through 18771 annotations produced 1 hits



Klp59C (Klp59C):

Annotation Number : CG3219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034824
Gbrowse : chr2R:19011549-19013565 (-) // 100.0 //
Probeset : 1624114_at
Accessions : protein= NP_611759;, nucleotide= NM_137915;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from electronic annota
FlyMine data for FBgn0034824.
BDGP gene expression has embryonic in situ data for Klp59C: 4 pix of staining in 1 body parts.
Homophila reports that CG3219 is a close match (3e-36) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
BioGrid reports that CG3219 interacts with CG4802 CG6726 .
TRiP has 1 RNAi stocks for FBgn0034824 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034824 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland4 10 of 4 0.11Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body1 00 of 4 0.04Down
Ovary0 00 of 4 0.00Down
Testis778 164 of 417.90Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass2 00 of 4 0.10Down
Larval CNS0 00 of 4 0.02Down
Larval Salivary gland4 20 of 4 0.09Down
Larval midgut1 00 of 4 0.04Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body30 192 of 4 0.70None
Larval trachea1 00 of 4 0.03Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly43 14 of 4

Looking for CG3219-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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