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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32199-RA through 18771 annotations produced 1 hits



(CG32199):

Annotation Number : CG32199
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052199
Gbrowse : chr3L:18604999-18607103 (+) // 100.0 //
Probeset : 1623331_at
Accessions : protein= NP_730347;, nucleotide= NM_168770;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from sequence or structural similarity /// 0004656 //
FlyMine data for FBgn0052199.
VDRC has 2 RNAi stocks for FBgn0052199 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.10Down
Salivary gland15 ± 41 of 4 0.30Down
Crop7 ± 10 of 4 0.10Down
Midgut4 ± 20 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body6 ± 10 of 4 0.13Down
Ovary1 ± 10 of 4 0.00Down
Testis13 ± 22 of 4 0.30Down
Male accessory glands4645 ± 1584 of 492.50Up
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass11 ± 30 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland4 ± 10 of 4 0.08Down
Larval midgut2 ± 00 of 4 0.05Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.08Down
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea1 ± 00 of 4 0.02Down
Larval carcass2 ± 10 of 4 0.04Down
S2 cells (growing)3 ± 10 of 4 0.07Down
Whole fly50 ± 54 of 4

Looking for CG32199-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime