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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32201-RA through 18771 annotations produced 1 hits



(CG32201):

Annotation Number : CG32201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052201
Gbrowse : chr3L:18602719-18604780 (+) // 100.0 //
Probeset : 1625375_at
Accessions : protein= NP_730346;, nucleotide= NM_168769;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0016222 // procollagen-proline 4-dioxygenase
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from sequence or structural similarity /// 0004656 //
FlyMine data for FBgn0052201.
BioGrid reports that CG32201 interacts with CG9522 .
VDRC has 1 RNAi stocks for FBgn0052201 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.20Down
Head3 ± 10 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 22 of 4 0.20Down
Salivary gland14 ± 11 of 4 0.48Down
Crop6 ± 20 of 4 0.20Down
Midgut7 ± 10 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.02Down
Fat body15 ± 112 of 4 0.53None
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 31 of 4 0.20Down
Male accessory glands4332 ± 1254 of 4143.40Up
Virgin spermatheca4 ± 10 of 4 0.15Down
Mated spermatheca2 ± 10 of 4 0.07Down
Adult carcass12 ± 30 of 4 0.40Down
Larval CNS4 ± 22 of 4 0.14Down
Larval Salivary gland2 ± 10 of 4 0.09Down
Larval midgut7 ± 10 of 4 0.23Down
Larval tubule6 ± 00 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body5 ± 10 of 4 0.20Down
Larval trachea1 ± 00 of 4 0.05Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly30 ± 44 of 4

Looking for CG32201-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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