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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32204-RA through 18771 annotations produced 1 hits



(CG32204):

Annotation Number : CG32204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052204
Gbrowse : chr3L:18915518-18939136 (-) // 100.0 //
Probeset : 1629269_at
Accessions : protein= NP_001097641;, nucleotide= NM_001104171;
FlyMine data for FBgn0052204.
BDGP gene expression has embryonic in situ data for CG32204: 13 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0052204 available for purchase.
VDRC has 2 RNAi stocks for FBgn0052204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain598 ± 134 of 442.90Up
Head86 ± 84 of 4 6.20Up
Eye13 ± 14 of 4 0.94None
Thoracicoabdominal ganglion207 ± 164 of 414.90Up
Salivary gland47 ± 34 of 4 3.42Up
Crop7 ± 13 of 4 0.60None
Midgut5 ± 00 of 4 0.40Down
Tubule6 ± 01 of 4 0.50Down
Hindgut3 ± 01 of 4 0.20Down
Heart2 ± 10 of 4 0.21Down
Fat body15 ± 54 of 4 1.11None
Ovary1 ± 00 of 4 0.10Down
Testis7 ± 04 of 4 0.60None
Male accessory glands6 ± 21 of 4 0.40Down
Virgin spermatheca4 ± 11 of 4 0.34Down
Mated spermatheca8 ± 13 of 4 0.64None
Adult carcass4 ± 20 of 4 0.30Down
Larval CNS251 ± 264 of 418.01Up
Larval Salivary gland8 ± 04 of 4 0.61None
Larval midgut6 ± 23 of 4 0.45Down
Larval tubule3 ± 02 of 4 0.20Down
Larval hindgut3 ± 11 of 4 0.27Down
Larval fat body3 ± 10 of 4 0.20Down
Larval trachea30 ± 24 of 4 2.21Up
Larval carcass3 ± 12 of 4 0.27Down
S2 cells (growing)11 ± 04 of 4 0.80None
Whole fly14 ± 24 of 4

Looking for CG32204-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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