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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3221-RA through 18771 annotations produced 1 hits



CG3221 (dgt3):

Annotation Number : CG3221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034569
Gbrowse : chr2R:16879780-16881767 (-) // 100.0 //
Probeset : 1630533_at
Accessions : protein= NP_611533;, nucleotide= NM_137689;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0034569.
VDRC has 2 RNAi stocks for FBgn0034569 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 03 of 4 0.10Down
Head11 13 of 4 0.20Down
Eye10 32 of 4 0.20Down
Thoracicoabdominal ganglion10 23 of 4 0.20Down
Salivary gland18 21 of 4 0.34Down
Crop12 13 of 4 0.20Down
Midgut10 00 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut21 14 of 4 0.40Down
Heart9 13 of 4 0.18Down
Fat body10 13 of 4 0.20Down
Ovary116 44 of 4 2.20Up
Testis81 24 of 4 1.50Up
Male accessory glands8 12 of 4 0.20Down
Virgin spermatheca7 02 of 4 0.13Down
Mated spermatheca6 22 of 4 0.13Down
Adult carcass19 14 of 4 0.40Down
Larval CNS111 54 of 4 2.09Up
Larval Salivary gland7 00 of 4 0.13Down
Larval midgut7 00 of 4 0.13Down
Larval tubule7 11 of 4 0.10Down
Larval hindgut18 14 of 4 0.34Down
Larval fat body21 43 of 4 0.40Down
Larval trachea37 34 of 4 0.70Down
Larval carcass20 04 of 4 0.38Down
S2 cells (growing)128 74 of 4 2.42Up
Whole fly53 34 of 4

Looking for CG3221-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime