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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32212-RA through 18771 annotations produced 1 hits



(CG32212):

Annotation Number : CG32212
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052212
Gbrowse : chr3L:19481053-19481448 (+) // 100.0 // /// chr3L:19416857-19471747 (+) // 92.56 //
Probeset : 1641330_at
Accessions : protein= NP_730416;, nucleotide= NM_168799;
FlyMine data for FBgn0052212.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head4 ± 10 of 4 0.50None
Eye7 ± 20 of 4 0.85None
Thoracicoabdominal ganglion7 ± 30 of 4 0.90None
Salivary gland23 ± 80 of 4 2.76None
Crop7 ± 10 of 4 0.90None
Midgut34 ± 40 of 4 4.10Up
Tubule21 ± 10 of 4 2.60Up
Hindgut17 ± 50 of 4 2.00None
Heart16 ± 30 of 4 1.99None
Fat body5 ± 00 of 4 0.61None
Ovary21 ± 20 of 4 2.50None
Testis37 ± 24 of 4 4.50Up
Male accessory glands13 ± 20 of 4 1.60None
Virgin spermatheca123 ± 150 of 414.63Up
Mated spermatheca153 ± 190 of 418.26Up
Adult carcass9 ± 30 of 4 1.10None
Larval CNS21 ± 40 of 4 2.52None
Larval Salivary gland23 ± 70 of 4 2.81None
Larval midgut34 ± 60 of 4 4.12Up
Larval tubule9 ± 20 of 4 1.10None
Larval hindgut9 ± 50 of 4 1.11None
Larval fat body8 ± 20 of 4 1.10None
Larval trachea24 ± 120 of 4 2.91None
Larval carcass33 ± 80 of 4 4.00None
S2 cells (growing)11 ± 30 of 4 1.41None
Whole fly8 ± 40 of 4

Looking for CG32212-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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