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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32214-RA through 18771 annotations produced 1 hits



825-Oak /// (825-Oak /// CG32213):

Annotation Number : CG32214
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052208 /// FBgn0052213 /// FBgn0052214
Gbrowse : chr3L:19460424-19460909 (+) // 100.0 // /// chr3L:19468914-19469417 (+) // 93.9 // /// chr3L:19416783-19466093 (+) // 92.72 // /// chr3L:19464849-19465352 (-) // 94.37 //
Probeset : 1631681_s_at
Accessions : protein= NP_730410; /// NP_730413;, nucleotide= NM_168796; /// NM_168797;
FlyMine data for FBgn0052208 /// FBgn0052213 /// FBgn0052214.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye3 ± 10 of 4 0.22Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.30None
Salivary gland14 ± 70 of 4 1.09None
Crop1 ± 00 of 4 0.10Down
Midgut4 ± 20 of 4 0.30None
Tubule4 ± 10 of 4 0.30Down
Hindgut4 ± 20 of 4 0.30None
Heart5 ± 10 of 4 0.41None
Fat body5 ± 10 of 4 0.36None
Ovary4 ± 10 of 4 0.30None
Testis8 ± 21 of 4 0.60None
Male accessory glands7 ± 30 of 4 0.50None
Virgin spermatheca7 ± 30 of 4 0.52None
Mated spermatheca2 ± 00 of 4 0.17Down
Adult carcass16 ± 50 of 4 1.20None
Larval CNS2 ± 10 of 4 0.16Down
Larval Salivary gland5 ± 10 of 4 0.42None
Larval midgut4 ± 10 of 4 0.29None
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.06Down
Larval fat body4 ± 00 of 4 0.30None
Larval trachea40 ± 114 of 4 2.92Up
Larval carcass4 ± 10 of 4 0.36None
S2 cells (growing)3 ± 10 of 4 0.24None
Whole fly13 ± 31 of 4

Looking for CG32214-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime