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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32224-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG32224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:20201041-20202579 (-) // 100.0 //
Probeset : 1638967_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.70None
Head2 ± 10 of 4 0.50None
Eye1 ± 00 of 4 0.23None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland5 ± 10 of 4 1.05None
Crop7 ± 10 of 4 1.50None
Midgut11 ± 11 of 4 2.30Up
Tubule4 ± 00 of 4 0.90None
Hindgut3 ± 10 of 4 0.70None
Heart3 ± 10 of 4 0.59None
Fat body6 ± 50 of 4 1.18None
Ovary3 ± 00 of 4 0.60None
Testis3 ± 10 of 4 0.70None
Male accessory glands2 ± 00 of 4 0.50None
Virgin spermatheca4 ± 10 of 4 0.78None
Mated spermatheca2 ± 10 of 4 0.55None
Adult carcass1 ± 00 of 4 0.30None
Larval CNS2 ± 10 of 4 0.49None
Larval Salivary gland2 ± 00 of 4 0.40None
Larval midgut65 ± 124 of 412.88Up
Larval tubule6 ± 10 of 4 1.20None
Larval hindgut3 ± 10 of 4 0.67None
Larval fat body3 ± 10 of 4 0.80None
Larval trachea5 ± 30 of 4 1.17None
Larval carcass6 ± 00 of 4 1.25None
S2 cells (growing)3 ± 00 of 4 0.65None
Whole fly5 ± 10 of 4

Looking for CG32224-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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