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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG32226-RA through 18771 annotations produced 1 hits



(CG32226):

Annotation Number : CG32226
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052226
Gbrowse : chr3L:20290228-20295202 (-) // 100.0 //
Probeset : 1630658_at
Accessions : protein= NP_730508;, nucleotide= NM_168841;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005529 // sugar binding // inferred from electroni
FlyMine data for FBgn0052226.
TRiP has 1 RNAi stocks for FBgn0052226 available for purchase.
VDRC has 3 RNAi stocks for FBgn0052226 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain351 ± 64 of 4 3.40Up
Head131 ± 44 of 4 1.30None
Eye170 ± 64 of 4 1.66Up
Thoracicoabdominal ganglion417 ± 184 of 4 4.10Up
Salivary gland121 ± 84 of 4 1.19None
Crop90 ± 54 of 4 0.90None
Midgut127 ± 34 of 4 1.20None
Tubule108 ± 44 of 4 1.10None
Hindgut75 ± 14 of 4 0.70None
Heart58 ± 24 of 4 0.57Down
Fat body61 ± 24 of 4 0.60None
Ovary215 ± 94 of 4 2.10Up
Testis88 ± 44 of 4 0.90None
Male accessory glands99 ± 74 of 4 1.00None
Virgin spermatheca111 ± 24 of 4 1.09None
Mated spermatheca113 ± 44 of 4 1.11None
Adult carcass60 ± 24 of 4 0.60Down
Larval CNS255 ± 44 of 4 2.49Up
Larval Salivary gland136 ± 54 of 4 1.33None
Larval midgut136 ± 34 of 4 1.33None
Larval tubule85 ± 64 of 4 0.80None
Larval hindgut89 ± 54 of 4 0.87None
Larval fat body78 ± 64 of 4 0.80None
Larval trachea71 ± 124 of 4 0.70None
Larval carcass70 ± 24 of 4 0.69None
S2 cells (growing)114 ± 34 of 4 1.12None
Whole fly102 ± 134 of 4

Looking for CG32226-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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